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SGMS2 sphingomyelin synthase 2 [ Ursus americanus (American black bear) ]

Gene ID: 123793378, updated on 22-Mar-2024

Summary

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Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus americanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current gsc_jax_bbear_1.0 (GCF_020975775.1) Unplaced Scaffold NW_025577388.1 (52088614..52182317, complement)

NW_025577388.1Genomic Context describing neighboring genes Neighboring gene hydroxyacyl-CoA dehydrogenase Neighboring gene cytochrome P450 2U1 Neighboring gene uncharacterized LOC123793379 Neighboring gene cytochrome b-c1 complex subunit 7-like Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025577388 Unplaced Scaffold Reference gsc_jax_bbear_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gsc_jax_bbear_1.0 Primary Assembly

Genomic

  1. NW_025577388.1 Reference gsc_jax_bbear_1.0 Primary Assembly

    Range
    52088614..52182317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045799208.1 → XP_045655164.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A452SSG5

  2. XM_045799203.1 → XP_045655159.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A452SSG5

  3. XM_045799206.1 → XP_045655162.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A452SSG5

  4. XM_045799205.1 → XP_045655161.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A452SSG5

  5. XM_045799207.1 → XP_045655163.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A452SSG5

  6. XM_045799210.1 → XP_045655166.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A452SSG5

  7. XM_045799209.1 → XP_045655165.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

    UniProtKB/TrEMBL
    A0A452SSG5
Nucleotide Protein
Heading Accession and Version

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