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SMPD2 sphingomyelin phosphodiesterase 2 [ Ursus americanus (American black bear) ]

Gene ID: 123792941, updated on 22-Mar-2024

Summary

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Gene symbol
SMPD2
Gene description
sphingomyelin phosphodiesterase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus americanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See SMPD2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current gsc_jax_bbear_1.0 (GCF_020975775.1) Unplaced Scaffold NW_025577385.1 (656215..659130)

NW_025577385.1Genomic Context describing neighboring genes Neighboring gene CD164 molecule Neighboring gene uncharacterized LOC123792943 Neighboring gene peptidylprolyl isomerase like 6 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene uncharacterized LOC123792944 Neighboring gene zinc finger and BTB domain containing 24

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025577385 Unplaced Scaffold Reference gsc_jax_bbear_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gsc_jax_bbear_1.0 Primary Assembly

Genomic

  1. NW_025577385.1 Reference gsc_jax_bbear_1.0 Primary Assembly

    Range
    656215..659130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045798458.1 → XP_045654414.1  sphingomyelin phosphodiesterase 2

    UniProtKB/TrEMBL
    A0A452RU49
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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