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ITGA6 integrin subunit alpha 6 [ Ursus americanus (American black bear) ]

Gene ID: 123780702, updated on 22-Mar-2024

Summary

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Gene symbol
ITGA6
Gene description
integrin subunit alpha 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus americanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See ITGA6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current gsc_jax_bbear_1.0 (GCF_020975775.1) Unplaced Scaffold NW_025576577.1 (1178353..1252101, complement)

NW_025576577.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein EWS-like Neighboring gene uncharacterized LOC123783185 Neighboring gene pyruvate dehydrogenase kinase 1 Neighboring gene distal-less homeobox 2 Neighboring gene distal-less homeobox 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025576577 Unplaced Scaffold Reference gsc_jax_bbear_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gsc_jax_bbear_1.0 Primary Assembly

Genomic

  1. NW_025576577.1 Reference gsc_jax_bbear_1.0 Primary Assembly

    Range
    1178353..1252101 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045779772.1 → XP_045635728.1  integrin alpha-6 isoform X3

  2. XM_045779756.1 → XP_045635712.1  integrin alpha-6 isoform X1

    UniProtKB/TrEMBL
    A0A452SNI0

  3. XM_045779763.1 → XP_045635719.1  integrin alpha-6 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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