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PNPLA6 patatin like phospholipase domain containing 6 [ Ursus americanus (American black bear) ]

Gene ID: 123777550, updated on 22-Mar-2024

Summary

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Gene symbol
PNPLA6
Gene description
patatin like phospholipase domain containing 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus americanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See PNPLA6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current gsc_jax_bbear_1.0 (GCF_020975775.1) Unplaced Scaffold NW_025578186.1 (1087286..1107919, complement)

NW_025578186.1Genomic Context describing neighboring genes Neighboring gene XPA binding protein 2 Neighboring gene calmodulin regulated spectrin associated protein family member 3 Neighboring gene mucolipin TRP cation channel 1 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025578186 Unplaced Scaffold Reference gsc_jax_bbear_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gsc_jax_bbear_1.0 Primary Assembly

Genomic

  1. NW_025578186.1 Reference gsc_jax_bbear_1.0 Primary Assembly

    Range
    1087286..1107919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045774284.1 → XP_045630240.1  patatin-like phospholipase domain-containing protein 6 isoform X5

  2. XM_045774281.1 → XP_045630237.1  patatin-like phospholipase domain-containing protein 6 isoform X4

  3. XM_045774282.1 → XP_045630238.1  patatin-like phospholipase domain-containing protein 6 isoform X5

  4. XM_045774285.1 → XP_045630241.1  patatin-like phospholipase domain-containing protein 6 isoform X6

    UniProtKB/TrEMBL
    A0A452RXP2

  5. XM_045774279.1 → XP_045630235.1  patatin-like phospholipase domain-containing protein 6 isoform X2

  6. XM_045774278.1 → XP_045630234.1  patatin-like phospholipase domain-containing protein 6 isoform X1

  7. XM_045774280.1 → XP_045630236.1  patatin-like phospholipase domain-containing protein 6 isoform X3

Nucleotide Protein
Heading Accession and Version

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