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SPHK2 sphingosine kinase 2 [ Ursus americanus (American black bear) ]

Gene ID: 123776264, updated on 22-Mar-2024

Summary

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Gene symbol
SPHK2
Gene description
sphingosine kinase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus americanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See SPHK2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current gsc_jax_bbear_1.0 (GCF_020975775.1) Unplaced Scaffold NW_025578148.1 (1003271..1011751, complement)

NW_025578148.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 11 Neighboring gene D-box binding PAR bZIP transcription factor Neighboring gene ribosomal protein L18 Neighboring gene family with sequence similarity 83 member E Neighboring gene sperm acrosome associated 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025578148 Unplaced Scaffold Reference gsc_jax_bbear_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphinganine-1-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gsc_jax_bbear_1.0 Primary Assembly

Genomic

  1. NW_025578148.1 Reference gsc_jax_bbear_1.0 Primary Assembly

    Range
    1003271..1011751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045772142.1 → XP_045628098.1  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A452R4M5

  2. XM_045772150.1 → XP_045628106.1  sphingosine kinase 2 isoform X5

  3. XM_045772143.1 → XP_045628099.1  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A452R4M5

  4. XM_045772144.1 → XP_045628100.1  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A452R4M5

  5. XM_045772146.1 → XP_045628102.1  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A452R4M5

  6. XM_045772145.1 → XP_045628101.1  sphingosine kinase 2 isoform X2

    UniProtKB/TrEMBL
    A0A452R4M5

  7. XM_045772141.1 → XP_045628097.1  sphingosine kinase 2 isoform X1

  8. XM_045772148.1 → XP_045628104.1  sphingosine kinase 2 isoform X4

    UniProtKB/TrEMBL
    A0A452R4N9

  9. XM_045772149.1 → XP_045628105.1  sphingosine kinase 2 isoform X4

    UniProtKB/TrEMBL
    A0A452R4N9

  10. XM_045772147.1 → XP_045628103.1  sphingosine kinase 2 isoform X3

  11. XM_045772151.1 → XP_045628107.1  sphingosine kinase 2 isoform X5

  12. XM_045772153.1 → XP_045628109.1  sphingosine kinase 2 isoform X5

Nucleotide Protein
Heading Accession and Version

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