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CHID1 chitinase domain containing 1 [ Ursus americanus (American black bear) ]

Gene ID: 123775512, updated on 22-Mar-2024

Summary

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Gene symbol
CHID1
Gene description
chitinase domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus americanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See CHID1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current gsc_jax_bbear_1.0 (GCF_020975775.1) Unplaced Scaffold NW_025578113.1 (1775829..1804486)

NW_025578113.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene uncharacterized LOC123775541 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene tetraspanin 4 Neighboring gene RNA polymerase II, I and III subunit L

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025578113 Unplaced Scaffold Reference gsc_jax_bbear_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gsc_jax_bbear_1.0 Primary Assembly

Genomic

  1. NW_025578113.1 Reference gsc_jax_bbear_1.0 Primary Assembly

    Range
    1775829..1804486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045770768.1 → XP_045626724.1  chitinase domain-containing protein 1 isoform X1

  2. XM_045770769.1 → XP_045626725.1  chitinase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A452SIS3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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