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LOC123759111 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like [ Procambarus clarkii (red swamp crayfish) ]

Gene ID: 123759111, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123759111
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like
See related
EnsemblRapid:LOC123759111
Gene type
protein coding
RefSeq status
MODEL
Organism
Procambarus clarkii
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus
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Genomic context

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See LOC123759111 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
18
Annotation release Status Assembly LG Location
100 current ASM2042438v2 (GCF_020424385.1) LG22 NC_059592.1 (7497450..7557748)

Linkage Group LG22 - NC_059592.1Genomic Context describing neighboring genes Neighboring gene glutenin, high molecular weight subunit DY10-like Neighboring gene guanine nucleotide-binding protein subunit beta-2 Neighboring gene neprilysin-1-like Neighboring gene uncharacterized LOC123759113

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059592.1 Chromosome LG22 Reference ASM2042438v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of cytoskeletal and molt-related genes is temporally scheduled in the hypodermis of the crayfish Procambarus clarkii during premolt. Tom M, et al. J Exp Biol, 2014 Dec 1. PMID 25278476

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Procambarus clarkii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2042438v2 Primary Assembly

Genomic

  1. NC_059592.1 Reference ASM2042438v2 Primary Assembly

    Range
    7497450..7557748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045743975.1 → XP_045599931.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X4

    Related
    XP_045599931.1, XM_045743975.1

  2. XM_045743973.1 → XP_045599929.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X3

    Related
    XP_045599929.1, XM_045743973.1

  3. XM_045743971.1 → XP_045599927.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X1

    Related
    XP_045599927.1, XM_045743971.1

  4. XM_045743972.1 → XP_045599928.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X2

    Related
    XP_045599928.1, XM_045743972.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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