U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC123759032 delta-sarcoglycan [ Procambarus clarkii (red swamp crayfish) ]

Gene ID: 123759032, updated on 30-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC123759032
Gene description
delta-sarcoglycan
See related
EnsemblRapid:LOC123759032
Gene type
protein coding
RefSeq status
MODEL
Organism
Procambarus clarkii
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC123759032 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_10 current FALCON_Pclarkii_2.0 (GCF_040958095.1) 15 NC_091164.1 (382536..395963)
100 previous assembly ASM2042438v2 (GCF_020424385.1) Linkage Group LG22 NC_059592.1 (524714..539504, complement)

Chromosome 15 - NC_091164.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123759033 Neighboring gene hepatitis A virus cellular receptor 1-like Neighboring gene cGMP-specific 3',5'-cyclic phosphodiesterase Neighboring gene trans-Golgi network integral membrane protein 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The eyestalk transcriptome of red swamp crayfish Procambarus clarkii. Manfrin C, et al. Gene, 2015 Feb 15. PMID 25479010
  2. Expression of cytoskeletal and molt-related genes is temporally scheduled in the hypodermis of the crayfish Procambarus clarkii during premolt. Tom M, et al. J Exp Biol, 2014 Dec 1. PMID 25278476
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_040958095.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FALCON_Pclarkii_2.0 Primary Assembly

Genomic

  1. NC_091164.1 Reference FALCON_Pclarkii_2.0 Primary Assembly

    Range
    382536..395963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045743771.2 → XP_045599727.2  delta-sarcoglycan

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases