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IL1RAP interleukin 1 receptor accessory protein [ Leopardus geoffroyi (Geoffroy's cat) ]

Gene ID: 123611088, updated on 22-Mar-2024

Summary

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Gene symbol
IL1RAP
Gene description
interleukin 1 receptor accessory protein
See related
EnsemblRapid:ENSFCTG00000009279
Gene type
protein coding
RefSeq status
MODEL
Organism
Leopardus geoffroyi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Leopardus
Orthologs
human mouse all
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Genomic context

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See IL1RAP in Genome Data Viewer
Location:
chromosome: C2
Exon count:
13
Annotation release Status Assembly Chr Location
100 current O.geoffroyi_Oge1_pat1.0 (GCF_018350155.1) C2 NC_059333.1 (77616664..77755135, complement)

Chromosome C2 - NC_059333.1Genomic Context describing neighboring genes Neighboring gene geminin coiled-coil domain containing Neighboring gene 55 kDa erythrocyte membrane protein-like Neighboring gene transmembrane protein 207 Neighboring gene claudin 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059333.1 Chromosome C2 Reference O.geoffroyi_Oge1_pat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables interleukin-1 receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables interleukin-1 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interleukin-1 receptor accessory protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leopardus geoffroyi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O.geoffroyi_Oge1_pat1.0 Primary Assembly

Genomic

  1. NC_059333.1 Reference O.geoffroyi_Oge1_pat1.0 Primary Assembly

    Range
    77616664..77755135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045502591.1 → XP_045358547.1  interleukin-1 receptor accessory protein isoform X1

    Related
    ENSFCTP00000017056.1, ENSFCTT00000024914.1
    Conserved Domains (4) summary
    pfam01582
    Location:403 → 539
    TIR; TIR domain
    cd20931
    Location:243 → 349
    Ig3_IL1RAP; Third immunoglobulin domain of interleukin-1 receptor accessory protein (IL1RAP)
    cd20992
    Location:25 → 132
    Ig1_IL1R_like; First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R), and similar domains
    cd20993
    Location:143 → 235
    Ig2_IL-1RAP_like; Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R), and similar domains

  2. XM_045502592.1 → XP_045358548.1  interleukin-1 receptor accessory protein isoform X2

    Conserved Domains (4) summary
    pfam01582
    Location:403 → 539
    TIR; TIR domain
    cd20931
    Location:243 → 349
    Ig3_IL1RAP; Third immunoglobulin domain of interleukin-1 receptor accessory protein (IL1RAP)
    cd20992
    Location:25 → 132
    Ig1_IL1R_like; First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R), and similar domains
    cd20993
    Location:143 → 235
    Ig2_IL-1RAP_like; Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R), and similar domains

  3. XM_045502593.1 → XP_045358549.1  interleukin-1 receptor accessory protein isoform X3

    Conserved Domains (5) summary
    pfam01582
    Location:403 → 544
    TIR; TIR domain
    cd00096
    Location:145 → 150
    Ig; Ig strand A [structural motif]
    cd20931
    Location:243 → 349
    Ig3_IL1RAP; Third immunoglobulin domain of interleukin-1 receptor accessory protein (IL1RAP)
    cd20992
    Location:25 → 132
    Ig1_IL1R_like; First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R), and similar domains
    cl11960
    Location:143 → 235
    Ig; Immunoglobulin domain

RNA

  1. XR_006718425.1 RNA Sequence

  2. XR_006718426.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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