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XCL2 X-C motif chemokine ligand 2 [ Leopardus geoffroyi (Geoffroy's cat) ]

Gene ID: 123585163, updated on 22-Mar-2024

Summary

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Gene symbol
XCL2
Gene description
X-C motif chemokine ligand 2
See related
EnsemblRapid:ENSFCTG00000020939
Gene type
protein coding
RefSeq status
MODEL
Organism
Leopardus geoffroyi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Leopardus
Orthologs
human all
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Genomic context

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See XCL2 in Genome Data Viewer
Location:
chromosome: C3
Exon count:
3
Annotation release Status Assembly Chr Location
100 current O.geoffroyi_Oge1_pat1.0 (GCF_018350155.1) C3 NC_059338.1 (58317889..58321041, complement)

Chromosome C3 - NC_059338.1Genomic Context describing neighboring genes Neighboring gene dermatopontin Neighboring gene uncharacterized LOC123585162 Neighboring gene uncharacterized LOC123585164 Neighboring gene T-box transcription factor 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059338.1 Chromosome C3 Reference O.geoffroyi_Oge1_pat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CCR chemokine receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chemokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to interleukin-1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to tumor necrosis factor IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to type II interferon IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chemokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lymphocyte chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine SCM-1 beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leopardus geoffroyi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O.geoffroyi_Oge1_pat1.0 Primary Assembly

Genomic

  1. NC_059338.1 Reference O.geoffroyi_Oge1_pat1.0 Primary Assembly

    Range
    58317889..58321041 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045453018.1 → XP_045308974.1  cytokine SCM-1 beta

    Related
    ENSFCTP00000041277.1, ENSFCTT00000057390.1
Nucleotide Protein
Heading Accession and Version

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