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LOC123558720 gamma-sarcoglycan-like [ Mercenaria mercenaria ]

Gene ID: 123558720, updated on 23-Nov-2023

Summary

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Gene symbol
LOC123558720
Gene description
gamma-sarcoglycan-like
See related
EnsemblRapid:LOC123558720
Gene type
protein coding
RefSeq status
MODEL
Organism
Mercenaria mercenaria
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Venerida; Veneroidea; Veneridae; Mercenaria
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Genomic context

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See LOC123558720 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_01 current MADL_Memer_1 (GCF_021730395.1) 5 NC_069365.1 (1959888..1968672)
100.20221206 previous assembly ASM1480567v1.1 (GCF_014805675.1) 7 NC_059311.1 (2021975..2030761, complement)

Chromosome 5 - NC_069365.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128557007 Neighboring gene tumor suppressor candidate 3-like Neighboring gene toll-like receptor 4 Neighboring gene BTB/POZ domain-containing protein 17-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like; zeta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021730395.1-RS_2023_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MADL_Memer_1 Primary Assembly

Genomic

  1. NC_069365.1 Reference MADL_Memer_1 Primary Assembly

    Range
    1959888..1968672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045350600.2 → XP_045206535.1  gamma-sarcoglycan-like isoform X2

    Related
    XP_045206535.1

  2. XM_045350593.2 → XP_045206528.1  zeta-sarcoglycan-like isoform X1

    Related
    XP_045206528.1

  3. XM_045350598.2 → XP_045206533.1  zeta-sarcoglycan-like isoform X1

    Related
    XP_045206533.1

  4. XM_045350594.2 → XP_045206529.1  zeta-sarcoglycan-like isoform X1

    Related
    XP_045206529.1

  5. XM_045350597.2 → XP_045206532.1  zeta-sarcoglycan-like isoform X1

    Related
    XP_045206532.1
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases