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LOC123542823 uncharacterized LOC123542823 [ Mercenaria mercenaria ]

Gene ID: 123542823, updated on 26-Jun-2024

Summary

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Gene symbol
LOC123542823
Gene description
uncharacterized LOC123542823
See related
EnsemblRapid:LOC123542823
Gene type
protein coding
RefSeq status
MODEL
Organism
Mercenaria mercenaria
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Venerida; Veneroidea; Veneridae; Mercenaria
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Genomic context

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See LOC123542823 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_01 current MADL_Memer_1 (GCF_021730395.1) 19 NC_069379.1 (20182418..20239913)
100.20221206 previous assembly ASM1480567v1.1 (GCF_014805675.1) 19 NC_059323.1 (22848326..22883079, complement)

Chromosome 19 - NC_069379.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128550985 Neighboring gene uncharacterized LOC128550986 Neighboring gene uncharacterized LOC123543186 Neighboring gene alpha-(1,3)-fucosyltransferase C-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC123542823

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021730395.1-RS_2023_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MADL_Memer_1 Primary Assembly

Genomic

  1. NC_069379.1 Reference MADL_Memer_1 Primary Assembly

    Range
    20182418..20239913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053530976.1 → XP_053386951.1  uncharacterized protein LOC123542823

  2. XM_053530975.1 → XP_053386950.1  uncharacterized protein LOC123542823

RNA

  1. XR_008368562.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases