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LOC123534948 beta-1,3-galactosyltransferase 1-like [ Mercenaria mercenaria ]

Gene ID: 123534948, updated on 23-Nov-2023

Summary

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Gene symbol
LOC123534948
Gene description
beta-1,3-galactosyltransferase 1-like
See related
EnsemblRapid:LOC123534948 EnsemblRapid:LOC123534950
Gene type
protein coding
RefSeq status
MODEL
Organism
Mercenaria mercenaria
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Venerida; Veneroidea; Veneridae; Mercenaria
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Genomic context

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See LOC123534948 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_01 current MADL_Memer_1 (GCF_021730395.1) 12 NC_069372.1 (40667949..40747995, complement)
100.20221206 previous assembly ASM1480567v1.1 (GCF_014805675.1) 15 NC_059319.1 (41664906..41686058, complement)

Chromosome 12 - NC_069372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123534954 Neighboring gene uncharacterized LOC123534951 Neighboring gene uncharacterized LOC123533271 Neighboring gene uncharacterized LOC123534946 Neighboring gene uncharacterized LOC123533272

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021730395.1-RS_2023_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MADL_Memer_1 Primary Assembly

Genomic

  1. NC_069372.1 Reference MADL_Memer_1 Primary Assembly

    Range
    40667949..40747995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053519820.1 → XP_053375795.1  beta-1,3-galactosyltransferase 1-like isoform X1

  2. XM_053519817.1 → XP_053375792.1  beta-1,3-galactosyltransferase 1-like isoform X1

  3. XM_053519819.1 → XP_053375794.1  beta-1,3-galactosyltransferase 1-like isoform X1

  4. XM_053519816.1 → XP_053375791.1  beta-1,3-galactosyltransferase 1-like isoform X1

  5. XM_045317441.2 → XP_045173376.2  beta-1,3-galactosyltransferase 1-like isoform X1

  6. XM_045317438.2 → XP_045173373.2  beta-1,3-galactosyltransferase 1-like isoform X1

  7. XM_045317439.2 → XP_045173374.2  beta-1,3-galactosyltransferase 1-like isoform X1

  8. XM_045317440.2 → XP_045173375.2  beta-1,3-galactosyltransferase 1-like isoform X1

  9. XM_045317442.2 → XP_045173377.2  beta-1,3-galactosyltransferase 1-like isoform X1

  10. XM_045317450.2 → XP_045173385.2  beta-1,3-galactosyltransferase 1-like isoform X2

  11. XM_045317447.2 → XP_045173382.2  beta-1,3-galactosyltransferase 1-like isoform X2

  12. XM_053519818.1 → XP_053375793.1  beta-1,3-galactosyltransferase 1-like isoform X2

  13. XM_053519815.1 → XP_053375790.1  beta-1,3-galactosyltransferase 1-like isoform X2

  14. XM_045317443.2 → XP_045173378.2  beta-1,3-galactosyltransferase 1-like isoform X2

  15. XM_045317449.2 → XP_045173384.2  beta-1,3-galactosyltransferase 1-like isoform X2

  16. XM_045317444.2 → XP_045173379.2  beta-1,3-galactosyltransferase 1-like isoform X2

  17. XM_045317448.2 → XP_045173383.2  beta-1,3-galactosyltransferase 1-like isoform X2

  18. XM_045317446.2 → XP_045173381.2  beta-1,3-galactosyltransferase 1-like isoform X2

  19. XM_045317445.2 → XP_045173380.2  beta-1,3-galactosyltransferase 1-like isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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