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LOC123511295 irregular chiasm C-roughest protein-like [ Portunus trituberculatus (swimming crab) ]

Gene ID: 123511295, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123511295
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:LOC123511295
Gene type
protein coding
RefSeq status
MODEL
Organism
Portunus trituberculatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Brachyura; Eubrachyura; Portunoidea; Portunidae; Portuninae; Portunus
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Genomic context

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See LOC123511295 in Genome Data Viewer
Location:
chromosome: 31
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM1759143v1 (GCF_017591435.1) 31 NC_059285.1 (10824952..11175004)

Chromosome 31 - NC_059285.1Genomic Context describing neighboring genes Neighboring gene peroxidase-like Neighboring gene Seryl-tRNA synthetase, mitochondrial Neighboring gene uncharacterized LOC123511615 Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059285.1 Chromosome 31 Reference ASM1759143v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Portunus trituberculatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759143v1 Primary Assembly

Genomic

  1. NC_059285.1 Reference ASM1759143v1 Primary Assembly

    Range
    10824952..11175004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045267054.1 → XP_045122989.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_045122989.1, XM_045267054.1

  2. XM_045267052.1 → XP_045122987.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_045122987.1, XM_045267052.1

  3. XM_045267055.1 → XP_045122990.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_045122990.1, XM_045267055.1

  4. XM_045267056.1 → XP_045122991.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_045122991.1, XM_045267056.1

  5. XM_045267053.1 → XP_045122988.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_045122988.1, XM_045267053.1

  6. XM_045267051.1 → XP_045122986.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    XP_045122986.1, XM_045267051.1

  7. XM_045267059.1 → XP_045122994.1  irregular chiasm C-roughest protein-like isoform X3

    Related
    XP_045122994.1, XM_045267059.1

  8. XM_045267058.1 → XP_045122993.1  irregular chiasm C-roughest protein-like isoform X2

    Related
    XP_045122993.1, XM_045267058.1

  9. XM_045267060.1 → XP_045122995.1  irregular chiasm C-roughest protein-like isoform X4

    Related
    XP_045122995.1, XM_045267060.1
Nucleotide Protein
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