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Hcf Host cell factor [ Portunus trituberculatus (swimming crab) ]

Gene ID: 123510370, updated on 3-Jul-2024

Summary

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Gene symbol
Hcf
Gene description
Host cell factor
See related
EnsemblRapid:LOC123510370
Gene type
protein coding
RefSeq status
MODEL
Organism
Portunus trituberculatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Brachyura; Eubrachyura; Portunoidea; Portunidae; Portuninae; Portunus
Orthologs
fruit fly all
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Genomic context

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See Hcf in Genome Data Viewer
Location:
chromosome: 28
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM1759143v1 (GCF_017591435.1) 28 NC_059282.1 (10552776..10572616, complement)

Chromosome 28 - NC_059282.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123510321 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class O Neighboring gene N-fatty-acyl-amino acid synthase/hydrolase PM20D1-like Neighboring gene mucin-2-like Neighboring gene uncharacterized LOC123510147

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059282.1 Chromosome 28 Reference ASM1759143v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Portunus trituberculatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1759143v1 Primary Assembly

Genomic

  1. NC_059282.1 Reference ASM1759143v1 Primary Assembly

    Range
    10552776..10572616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045265478.1 → XP_045121413.1  host cell factor 2-like isoform X2

    Related
    XP_045121413.1, XM_045265478.1

  2. XM_045265479.1 → XP_045121414.1  host cell factor 2-like isoform X3

    Related
    XP_045121414.1, XM_045265479.1

  3. XM_045265477.1 → XP_045121412.1  host cell factor 2-like isoform X1

    Related
    XP_045121412.1, XM_045265477.1

  4. XM_045265480.1 → XP_045121415.1  host cell factor 2-like isoform X4

    Related
    XP_045121415.1, XM_045265480.1
Nucleotide Protein
Heading Accession and Version

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