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LOC123471540 uncharacterized LOC123471540 [ Daphnia magna ]

Gene ID: 123471540, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123471540
Gene description
uncharacterized LOC123471540
See related
EnsemblRapid:LOC123471540
Gene type
protein coding
RefSeq status
MODEL
Organism
Daphnia magna
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
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Genomic context

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See LOC123471540 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
3
Annotation release Status Assembly LG Location
101 current ASM2063170v1.1 (GCF_020631705.1) LG4 NC_059185.1 (4821691..4825756, complement)

Linkage Group LG4 - NC_059185.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123471070 Neighboring gene sterol regulatory element-binding protein cleavage-activating protein Neighboring gene uncharacterized LOC123471544 Neighboring gene synaptotagmin-17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059185.1 Chromosome LG4 Reference ASM2063170v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: uncharacterized protein LOC123471540

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2063170v1.1 Primary Assembly

Genomic

  1. NC_059185.1 Reference ASM2063170v1.1 Primary Assembly

    Range
    4821691..4825756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045173076.1 → XP_045029011.1  LOW QUALITY PROTEIN: uncharacterized protein LOC123471540

    Related
    XP_045029011.1, XM_045173076.1
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases