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LINC02950 long intergenic non-protein coding RNA 2950 [ Homo sapiens (human) ]

Gene ID: 123466212, updated on 28-Oct-2024

Summary

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Official Symbol
LINC02950provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2950provided by HGNC
Primary source
HGNC:HGNC:55965
See related
Ensembl:ENSG00000254153 AllianceGenome:HGNC:55965
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC02950 in Genome Data Viewer
Location:
8p23.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (8456710..8461387, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11282010..11286687)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (8314220..8318897, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:8256091-8256704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8269459-8270166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8270167-8270872 Neighboring gene long intergenic non-protein coding RNA 2949 Neighboring gene uncharacterized LOC107986913 Neighboring gene Sharpr-MPRA regulatory region 2598 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:8324360-8325559 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:8328681-8329307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18897 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18898 Neighboring gene Sharpr-MPRA regulatory region 7090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26968 Neighboring gene uncharacterized LOC105379224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26969 Neighboring gene RNA, 7SL, cytoplasmic 178, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186598.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC103957
    Related
    ENST00000521218.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    8456710..8461387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    4890730..4895408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11282010..11286687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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