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EFNA1 ephrin A1 [ Bubalus bubalis (water buffalo) ]

Gene ID: 123465878, updated on 22-Mar-2024

Summary

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Gene symbol
EFNA1
Gene description
ephrin A1
See related
EnsemblRapid:ENSBALG00030029395
Gene type
protein coding
RefSeq status
MODEL
Organism
Bubalus bubalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bubalus
Orthologs
human mouse all
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Genomic context

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See EFNA1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
103 current NDDB_SH_1 (GCF_019923935.1) 6 NC_059162.1 (15527897..15534924, complement)

Chromosome 6 - NC_059162.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123465880 Neighboring gene solute carrier family 50 member 1 Neighboring gene dolichyl-phosphate mannosyltransferase subunit 3, regulatory Neighboring gene uncharacterized LOC123465881 Neighboring gene ephrin A3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059162.1 Chromosome 6 Reference NDDB_SH_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin-A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bubalus bubalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NDDB_SH_1 Primary Assembly

Genomic

  1. NC_059162.1 Reference NDDB_SH_1 Primary Assembly

    Range
    15527897..15534924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045166003.1 → XP_045021938.1  ephrin-A1 isoform X1

  2. XM_045166004.1 → XP_045021939.1  ephrin-A1 isoform X2

    Related
    ENSBALP00030054615.1, ENSBALT00030081549.1
    Conserved Domains (1) summary
    cd10425
    Location:19 → 145
    Ephrin-A_Ectodomain; Ectodomain of Ephrin A
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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