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LOC123386865 uncharacterized LOC123386865 [ Felis catus (domestic cat) ]

Gene ID: 123386865, updated on 16-Nov-2023

Summary

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Gene symbol
LOC123386865
Gene description
uncharacterized LOC123386865
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
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Genomic context

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See LOC123386865 in Genome Data Viewer
Location:
chromosome: B4
Exon count:
2
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) B4 NC_058374.1 (75524925..75530484)

Chromosome B4 - NC_058374.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 8S1-like Neighboring gene olfactory receptor 8S1-like Neighboring gene olfactory receptor 8S1-like Neighboring gene lactalbumin alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058374.1 Chromosome B4 Reference F.catus_Fca126_mat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in virion assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: uncharacterized protein LOC123386865

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058374.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    75524925..75530484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045062665.1 → XP_044918600.1  LOW QUALITY PROTEIN: uncharacterized protein LOC123386865

    UniProtKB/TrEMBL
    I7HGJ5
    Conserved Domains (6) summary
    cd06095
    Location:558 → 639
    RP_RTVL_H_like; Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements
    smart00343
    Location:509 → 525
    ZnF_C2HC; zinc finger
    cd03715
    Location:721 → 936
    RT_ZFREV_like; A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or ...
    cd09273
    Location:1184 → 1324
    RNase_HI_RT_Bel; Bel/Pao family of RNase HI in long-term repeat retroelements
    cl07828
    Location:1345 → 1436
    zf-H2C2; His(2)-Cys(2) zinc finger
    cl14782
    Location:1038 → 1116
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
Nucleotide Protein
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