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LOC123378900 cytochrome P450 20A1 [ Mauremys mutica (yellowpond turtle) ]

Gene ID: 123378900, updated on 22-Mar-2024

Summary

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Gene symbol
LOC123378900
Gene description
cytochrome P450 20A1
Locus tag
KIL84_012895
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys mutica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See LOC123378900 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM2049712v1 (GCF_020497125.1) 10 NC_059081.1 (59102562..59131068)

Chromosome 10 - NC_059081.1Genomic Context describing neighboring genes Neighboring gene neurobeachin like 1 Neighboring gene alpha-aspartyl dipeptidase-like Neighboring gene abl interactor 2 Neighboring gene Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 Neighboring gene uncharacterized LOC123378298 Neighboring gene CD28 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059081.1 Chromosome 10 Reference ASM2049712v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 20A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2049712v1 Primary Assembly

Genomic

  1. NC_059081.1 Reference ASM2049712v1 Primary Assembly

    Range
    59102562..59131068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045033170.1 → XP_044889105.1  cytochrome P450 20A1 isoform X2

    Conserved Domains (1) summary
    COG2124
    Location:110 → 451
    CypX; Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism, Defense mechanisms]

  2. XM_045033171.1 → XP_044889106.1  cytochrome P450 20A1 isoform X3

    UniProtKB/TrEMBL
    A0A9D3XQJ7
    Conserved Domains (2) summary
    PLN02738
    Location:261 → 346
    PLN02738; carotene beta-ring hydroxylase
    cl12078
    Location:13 → 368
    p450; Cytochrome P450

  3. XM_045033169.1 → XP_044889104.1  cytochrome P450 20A1 isoform X1

    Conserved Domains (1) summary
    COG2124
    Location:119 → 460
    CypX; Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism, Defense mechanisms]

  4. XM_045033172.1 → XP_044889107.1  cytochrome P450 20A1 isoform X4

    Conserved Domains (1) summary
    COG2124
    Location:12 → 292
    CypX; Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism, Defense mechanisms]
Nucleotide Protein
Heading Accession and Version

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