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SP5 Sp5 transcription factor [ Mauremys mutica (yellowpond turtle) ]

Gene ID: 123378898, updated on 22-Mar-2024

Summary

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Gene symbol
SP5
Gene description
Sp5 transcription factor
Locus tag
KIL84_012704
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys mutica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SP5 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM2049712v1 (GCF_020497125.1) 10 NC_059081.1 (38305593..38308216)

Chromosome 10 - NC_059081.1Genomic Context describing neighboring genes Neighboring gene ubiquitin protein ligase E3 component n-recognin 3 Neighboring gene myosin IIIB Neighboring gene uncharacterized LOC123378747 Neighboring gene glutamate rich 2 Neighboring gene glutamate decarboxylase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059081.1 Chromosome 10 Reference ASM2049712v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2049712v1 Primary Assembly

Genomic

  1. NC_059081.1 Reference ASM2049712v1 Primary Assembly

    Range
    38305593..38308216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045033166.1 → XP_044889101.1  transcription factor Sp5

    UniProtKB/TrEMBL
    A0A9D3XSW2
    Conserved Domains (3) summary
    COG5048
    Location:279 → 353
    COG5048; FOG: Zn-finger [General function prediction only]
    PRK12323
    Location:22 → 256
    PRK12323; DNA polymerase III subunit gamma/tau
    sd00017
    Location:269 → 288
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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