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SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 [ Mauremys mutica (yellowpond turtle) ]

Gene ID: 123378894, updated on 20-Sep-2024

Summary

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Gene symbol
SMARCAL1
Gene description
SNF2 related chromatin remodeling annealing helicase 1
Locus tag
KIL84_012444
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys mutica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SMARCAL1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM2049712v1 (GCF_020497125.1) 10 NC_059081.1 (4523894..4592115, complement)

Chromosome 10 - NC_059081.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123378247 Neighboring gene ribosomal protein L37a Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene X-ray repair cross complementing 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059081.1 Chromosome 10 Reference ASM2049712v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2049712v1 Primary Assembly

Genomic

  1. NC_059081.1 Reference ASM2049712v1 Primary Assembly

    Range
    4523894..4592115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045033163.1 → XP_044889098.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    UniProtKB/TrEMBL
    A0A9D3XR06
    Conserved Domains (2) summary
    COG0553
    Location:395 → 916
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18010
    Location:476 → 685
    DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

  2. XM_045033164.1 → XP_044889099.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    UniProtKB/TrEMBL
    A0A9D3XR06
    Conserved Domains (2) summary
    COG0553
    Location:395 → 916
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18010
    Location:476 → 685
    DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1

  3. XM_045033162.1 → XP_044889097.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    UniProtKB/TrEMBL
    A0A9D3XR06
    Conserved Domains (2) summary
    COG0553
    Location:395 → 916
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18010
    Location:476 → 685
    DEXHc_HARP_SMARCAL1; DEXH-box helicase domain of SMARCAL1
Nucleotide Protein
Heading Accession and Version

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