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CACYBP calcyclin binding protein [ Mauremys mutica (yellowpond turtle) ]

Gene ID: 123375534, updated on 22-Mar-2024

Summary

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Gene symbol
CACYBP
Gene description
calcyclin binding protein
Locus tag
KIL84_016299
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys mutica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See CACYBP in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM2049712v1 (GCF_020497125.1) 8 NC_059079.1 (60864564..60887858, complement)

Chromosome 8 - NC_059079.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123375536 Neighboring gene uncharacterized LOC123375326 Neighboring gene mitochondrial ribosomal protein S14 Neighboring gene RAB GTPase activating protein 1 like Neighboring gene transfer RNA isoleucine (anticodon GAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059079.1 Chromosome 8 Reference ASM2049712v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S100 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcyclin-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2049712v1 Primary Assembly

Genomic

  1. NC_059079.1 Reference ASM2049712v1 Primary Assembly

    Range
    60864564..60887858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045026503.1 → XP_044882438.1  calcyclin-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A9D4AMJ0
    Conserved Domains (3) summary
    cd06468
    Location:69 → 160
    p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...
    pfam05002
    Location:175 → 209
    SGS; SGS domain
    pfam09032
    Location:6 → 69
    Siah-Interact_N; Siah interacting protein, N terminal

  2. XM_045026504.1 → XP_044882439.1  calcyclin-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A9D4AMJ0
    Conserved Domains (2) summary
    cd06468
    Location:38 → 129
    p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...
    pfam05002
    Location:144 → 178
    SGS; SGS domain

  3. XM_045026505.1 → XP_044882440.1  calcyclin-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A9D4AMJ0
    Conserved Domains (2) summary
    cd06468
    Location:38 → 129
    p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...
    pfam05002
    Location:144 → 178
    SGS; SGS domain

  4. XM_045026501.1 → XP_044882436.1  calcyclin-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A9D4AMJ0
    Conserved Domains (3) summary
    cd06468
    Location:84 → 175
    p23_CacyBP; p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter ...
    pfam05002
    Location:190 → 224
    SGS; SGS domain
    pfam09032
    Location:21 → 84
    Siah-Interact_N; Siah interacting protein, N terminal
Nucleotide Protein
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