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ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 [ Mauremys mutica (yellowpond turtle) ]

Gene ID: 123343737, updated on 22-Mar-2024

Summary

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Gene symbol
ELFN1
Gene description
extracellular leucine rich repeat and fibronectin type III domain containing 1
Locus tag
KIL84_014709
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys mutica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See ELFN1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM2049712v1 (GCF_020497125.1) 11 NC_059082.1 (74421518..74690726)

Chromosome 11 - NC_059082.1Genomic Context describing neighboring genes Neighboring gene lysosomal alpha-glucosidase-like Neighboring gene transmembrane protein 184A Neighboring gene MAF bZIP transcription factor K Neighboring gene proteasome assembly chaperone 3 Neighboring gene mitotic arrest deficient 1 like 1 Neighboring gene nudix hydrolase 1 Neighboring gene mitochondrial rRNA methyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059082.1 Chromosome 11 Reference ASM2049712v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ELFN1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2049712v1 Primary Assembly

Genomic

  1. NC_059082.1 Reference ASM2049712v1 Primary Assembly

    Range
    74421518..74690726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044979029.1 → XP_044834964.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A9D4B7G2
    Conserved Domains (2) summary
    sd00031
    Location:67 → 87
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:44 → 257
    internalin_A; class 1 internalin InlA

  2. XM_044979027.1 → XP_044834962.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A9D4B7G2
    Conserved Domains (2) summary
    sd00031
    Location:67 → 87
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:44 → 257
    internalin_A; class 1 internalin InlA

  3. XM_044979028.1 → XP_044834963.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A9D4B7G2
    Conserved Domains (2) summary
    sd00031
    Location:67 → 87
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:44 → 257
    internalin_A; class 1 internalin InlA

  4. XM_044979030.1 → XP_044834965.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A9D4B7G2
    Conserved Domains (2) summary
    sd00031
    Location:67 → 87
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:44 → 257
    internalin_A; class 1 internalin InlA

  5. XM_044979033.1 → XP_044834968.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A9D4B7G2
    Conserved Domains (2) summary
    sd00031
    Location:67 → 87
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:44 → 257
    internalin_A; class 1 internalin InlA

  6. XM_044979032.1 → XP_044834967.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A9D4B7G2
    Conserved Domains (2) summary
    sd00031
    Location:67 → 87
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:44 → 257
    internalin_A; class 1 internalin InlA

  7. XM_044979034.1 → XP_044834969.1  protein ELFN1

    UniProtKB/TrEMBL
    A0A9D4B7G2
    Conserved Domains (2) summary
    sd00031
    Location:67 → 87
    LRR_1; leucine-rich repeat [structural motif]
    NF033189
    Location:44 → 257
    internalin_A; class 1 internalin InlA

RNA

  1. XR_006572337.1 RNA Sequence

  2. XR_006572336.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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