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LOC123253805 host cell factor 1-like [ Gracilinanus agilis (Agile Gracile Mouse Opossum) ]

Gene ID: 123253805, updated on 16-Nov-2023

Summary

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Gene symbol
LOC123253805
Gene description
host cell factor 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gracilinanus agilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Gracilinanus
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Genomic context

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See LOC123253805 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
100 current AgileGrace (GCF_016433145.1) X NC_058136.1 (78883307..78917383)

Chromosome X - NC_058136.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase HUWE1-like Neighboring gene sex-determining region Y protein-like Neighboring gene 60S ribosomal protein L10 Neighboring gene methyl-CpG-binding protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058136.1 Chromosome X Reference AgileGrace Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gracilinanus agilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AgileGrace Primary Assembly

Genomic

  1. NC_058136.1 Reference AgileGrace Primary Assembly

    Range
    78883307..78917383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044682941.1 → XP_044538876.1  host cell factor 1-like

    Conserved Domains (5) summary
    PLN02193
    Location:13 → 325
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:368 → 625
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1874 → 1934
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:203 → 256
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:510 → 955
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
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