U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHD4 chromodomain helicase DNA binding protein 4 [ Gracilinanus agilis (Agile Gracile Mouse Opossum) ]

Gene ID: 123249287, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
CHD4
Gene description
chromodomain helicase DNA binding protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Gracilinanus agilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Gracilinanus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHD4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
39
Annotation release Status Assembly Chr Location
100 current AgileGrace (GCF_016433145.1) 5 NC_058134.1 (196982596..197015717, complement)

Chromosome 5 - NC_058134.1Genomic Context describing neighboring genes Neighboring gene intermediate filament family orphan 1 Neighboring gene NOP2 nucleolar protein Neighboring gene small Cajal body-specific RNA 11 Neighboring gene lysophosphatidic acid receptor 5 Neighboring gene acrosin binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_058134.1 Chromosome 5 Reference AgileGrace Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chromodomain-helicase-DNA-binding protein 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gracilinanus agilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AgileGrace Primary Assembly

Genomic

  1. NC_058134.1 Reference AgileGrace Primary Assembly

    Range
    196982596..197015717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044678275.1 → XP_044534210.1  chromodomain-helicase-DNA-binding protein 4 isoform X7

    Conserved Domains (7) summary
    PLN03142
    Location:710 → 1267
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:358 → 400
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:437 → 479
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:605 → 659
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:484 → 562
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18056
    Location:712 → 943
    DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    pfam06461
    Location:1371 → 1507
    DUF1086; Domain of Unknown Function (DUF1086)

  2. XM_044678272.1 → XP_044534207.1  chromodomain-helicase-DNA-binding protein 4 isoform X4

    Conserved Domains (7) summary
    PLN03142
    Location:716 → 1273
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:364 → 406
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:443 → 485
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:611 → 665
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:490 → 568
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18056
    Location:718 → 949
    DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    pfam06461
    Location:1377 → 1513
    DUF1086; Domain of Unknown Function (DUF1086)

  3. XM_044678273.1 → XP_044534208.1  chromodomain-helicase-DNA-binding protein 4 isoform X5

    Conserved Domains (7) summary
    PLN03142
    Location:716 → 1273
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:364 → 406
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:443 → 485
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:611 → 665
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:490 → 568
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18056
    Location:718 → 949
    DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    pfam06461
    Location:1377 → 1513
    DUF1086; Domain of Unknown Function (DUF1086)

  4. XM_044678274.1 → XP_044534209.1  chromodomain-helicase-DNA-binding protein 4 isoform X6

    Conserved Domains (7) summary
    PLN03142
    Location:710 → 1267
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:358 → 400
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:437 → 479
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:605 → 659
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:484 → 562
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18056
    Location:712 → 943
    DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    pfam06461
    Location:1371 → 1507
    DUF1086; Domain of Unknown Function (DUF1086)

  5. XM_044678271.1 → XP_044534206.1  chromodomain-helicase-DNA-binding protein 4 isoform X3

    Conserved Domains (7) summary
    PLN03142
    Location:723 → 1280
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:371 → 413
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:450 → 492
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:618 → 672
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:497 → 575
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18056
    Location:725 → 956
    DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    pfam06461
    Location:1383 → 1519
    DUF1086; Domain of Unknown Function (DUF1086)

  6. XM_044678269.1 → XP_044534204.1  chromodomain-helicase-DNA-binding protein 4 isoform X1

    Conserved Domains (7) summary
    PLN03142
    Location:723 → 1280
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:371 → 413
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:450 → 492
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:618 → 672
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:497 → 575
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18056
    Location:725 → 956
    DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    pfam06461
    Location:1384 → 1520
    DUF1086; Domain of Unknown Function (DUF1086)

  7. XM_044678270.1 → XP_044534205.1  chromodomain-helicase-DNA-binding protein 4 isoform X2

    Conserved Domains (7) summary
    PLN03142
    Location:723 → 1280
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd15531
    Location:371 → 413
    PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd15532
    Location:450 → 492
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    cd18662
    Location:618 → 672
    CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18667
    Location:497 → 575
    CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
    cd18056
    Location:725 → 956
    DEXHc_CHD4; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 4
    pfam06461
    Location:1384 → 1520
    DUF1086; Domain of Unknown Function (DUF1086)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.