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SMPD2 sphingomyelin phosphodiesterase 2 [ Gracilinanus agilis (Agile Gracile Mouse Opossum) ]

Gene ID: 123247708, updated on 22-Mar-2024

Summary

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Gene symbol
SMPD2
Gene description
sphingomyelin phosphodiesterase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gracilinanus agilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Gracilinanus
Orthologs
human mouse all
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Genomic context

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See SMPD2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
100 current AgileGrace (GCF_016433145.1) 4 NC_058133.1 (359789480..359794775)

Chromosome 4 - NC_058133.1Genomic Context describing neighboring genes Neighboring gene CD164 molecule Neighboring gene peptidylprolyl isomerase like 6 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene zinc finger and BTB domain containing 24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058133.1 Chromosome 4 Reference AgileGrace Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gracilinanus agilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AgileGrace Primary Assembly

Genomic

  1. NC_058133.1 Reference AgileGrace Primary Assembly

    Range
    359789480..359794775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044676690.1 → XP_044532625.1  sphingomyelin phosphodiesterase 2

    Conserved Domains (1) summary
    cl00490
    Location:16 → 243
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_044676691.1 → XP_044532626.1  sphingomyelin phosphodiesterase 2

    Conserved Domains (1) summary
    cl00490
    Location:16 → 243
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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