U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COLEC10 collectin subfamily member 10 [ Gracilinanus agilis (Agile Gracile Mouse Opossum) ]

Gene ID: 123241193, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COLEC10
Gene description
collectin subfamily member 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Gracilinanus agilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Gracilinanus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See COLEC10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
100 current AgileGrace (GCF_016433145.1) 1 NC_058130.1 (665531543..665599903)

Chromosome 1 - NC_058130.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 12 Neighboring gene apolipoprotein B-100-like Neighboring gene TNF receptor superfamily member 11b Neighboring gene septin-10-like Neighboring gene phosphorylated adapter RNA export protein-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_058130.1 Chromosome 1 Reference AgileGrace Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collectin-10

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gracilinanus agilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AgileGrace Primary Assembly

Genomic

  1. NC_058130.1 Reference AgileGrace Primary Assembly

    Range
    665531543..665599903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044668899.1 → XP_044524834.1  collectin-10 isoform X1

    Conserved Domains (1) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)

  2. XM_044668906.1 → XP_044524841.1  collectin-10 isoform X2

    Conserved Domains (1) summary
    cl02432
    Location:157 → 196
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.