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HSPG2 heparan sulfate proteoglycan 2 [ Gracilinanus agilis (Agile Gracile Mouse Opossum) ]

Gene ID: 123241006, updated on 22-Mar-2024

Summary

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Gene symbol
HSPG2
Gene description
heparan sulfate proteoglycan 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gracilinanus agilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Gracilinanus
Orthologs
human mouse all
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Genomic context

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See HSPG2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
79
Annotation release Status Assembly Chr Location
100 current AgileGrace (GCF_016433145.1) 3 NC_058132.1 (58263129..58346715, complement)

Chromosome 3 - NC_058132.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 48 Neighboring gene low density lipoprotein receptor class A domain containing 2 Neighboring gene chymotrypsin-like elastase family member 3B Neighboring gene SCAN domain-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058132.1 Chromosome 3 Reference AgileGrace Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basement membrane-specific heparan sulfate proteoglycan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gracilinanus agilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AgileGrace Primary Assembly

Genomic

  1. NC_058132.1 Reference AgileGrace Primary Assembly

    Range
    58263129..58346715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044668716.1 → XP_044524651.1  basement membrane-specific heparan sulfate proteoglycan core protein

    Conserved Domains (8) summary
    smart00281
    Location:573 → 698
    LamB; Laminin B domain
    smart00409
    Location:2767 → 2844
    IG; Immunoglobulin
    smart00410
    Location:2306 → 2388
    IG_like; Immunoglobulin like
    cd00054
    Location:3333 → 3364
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00055
    Location:340 → 388
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3122 → 3271
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cd00096
    Location:2316 → 2320
    Ig; Ig strand B [structural motif]
    cl02507
    Location:72 → 130
    SEA; SEA domain
Nucleotide Protein
Heading Accession and Version

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