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PKD1L2 polycystin-1-like protein 2 [ Gracilinanus agilis (Agile Gracile Mouse Opossum) ]

Gene ID: 123237044, updated on 22-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gracilinanus agilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Gracilinanus
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
49
Annotation release Status Assembly Chr Location
100 current AgileGrace (GCF_016433145.1) 2 NC_058131.1 (218204272..218351495)

Chromosome 2 - NC_058131.1Genomic Context describing neighboring genes Neighboring gene gigaxonin Neighboring gene beta-carotene oxygenase 1 Neighboring gene chromosome 2 C16orf46 homolog Neighboring gene fructose-bisphosphate aldolase A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058131.1 Chromosome 2 Reference AgileGrace Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gracilinanus agilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AgileGrace Primary Assembly

Genomic

  1. NC_058131.1 Reference AgileGrace Primary Assembly

    Range
    218204272..218351495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044663653.1 → XP_044519588.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2

    Conserved Domains (6) summary
    smart00303
    Location:1292 → 1337
    GPS; G-protein-coupled receptor proteolytic site domain
    smart00034
    Location:28 → 154
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    PLN03223
    Location:2139 → 2496
    PLN03223; Polycystin cation channel protein; Provisional
    PRK01202
    Location:2545 → 2638
    PRK01202; glycine cleavage system protein GcvH
    cd01752
    Location:1402 → 1521
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02010
    Location:674 → 864
    REJ; REJ domain
Nucleotide Protein
Heading Accession and Version

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