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LOC123224097 probable beta-1,4-xylosyltransferase IRX10L [ Mangifera indica (mango) ]

Gene ID: 123224097, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123224097
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123224097 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 8 NC_058144.1 (4389979..4393578)

Chromosome 8 - NC_058144.1Genomic Context describing neighboring genes Neighboring gene protein BONZAI 2 Neighboring gene ethylene-responsive transcription factor ERF113-like Neighboring gene uncharacterized LOC123224149 Neighboring gene chromophore lyase CRL, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058144.1 Chromosome 8 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. Sherman A, et al. BMC Plant Biol, 2015 Nov 14. PMID 26573148, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058144.1 Reference CATAS_Mindica_2.1

    Range
    4389979..4393578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044647625.1 → XP_044503560.1  probable beta-1,4-xylosyltransferase IRX10L

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases