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LOC123223523 xyloglucan 6-xylosyltransferase 2-like [ Mangifera indica (mango) ]

Gene ID: 123223523, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123223523
Gene description
xyloglucan 6-xylosyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123223523 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 8 NC_058144.1 (3425026..3430646, complement)

Chromosome 8 - NC_058144.1Genomic Context describing neighboring genes Neighboring gene translocase of chloroplast 159, chloroplastic-like Neighboring gene stress-related protein-like Neighboring gene translocator protein homolog Neighboring gene cytochrome b561 and DOMON domain-containing protein At5g35735-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058144.1 Chromosome 8 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. Sherman A, et al. BMC Plant Biol, 2015 Nov 14. PMID 26573148, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan 6-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan 6-xylosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058144.1 Reference CATAS_Mindica_2.1

    Range
    3425026..3430646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044646704.1 → XP_044502639.1  xyloglucan 6-xylosyltransferase 2-like

    Conserved Domains (1) summary
    PLN03182
    Location:1 → 461
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional

  2. XM_044646702.1 → XP_044502637.1  xyloglucan 6-xylosyltransferase 2-like

    Conserved Domains (1) summary
    PLN03182
    Location:1 → 461
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional

RNA

  1. XR_006503800.1 RNA Sequence

  2. XR_006503801.1 RNA Sequence

  3. XR_006503799.1 RNA Sequence

Nucleotide Protein
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