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LOC123221674 beta-glucosidase-like SFR2, chloroplastic [ Mangifera indica (mango) ]

Gene ID: 123221674, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123221674
Gene description
beta-glucosidase-like SFR2, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123221674 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 7 NC_058143.1 (20192351..20196823)

Chromosome 7 - NC_058143.1Genomic Context describing neighboring genes Neighboring gene gibberellin 2-beta-dioxygenase 2-like Neighboring gene uncharacterized LOC123220105 Neighboring gene DEAD-box ATP-dependent RNA helicase 46 Neighboring gene YTH domain-containing protein ECT4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058143.1 Chromosome 7 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase-like SFR2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058143.1 Reference CATAS_Mindica_2.1

    Range
    20192351..20196823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044644559.1 → XP_044500494.1  beta-glucosidase-like SFR2, chloroplastic isoform X2

    Conserved Domains (1) summary
    cl40694
    Location:160 → 542
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]

  2. XM_044644558.1 → XP_044500493.1  beta-glucosidase-like SFR2, chloroplastic isoform X1

    Conserved Domains (1) summary
    cl40694
    Location:160 → 543
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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