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LOC123216266 rhamnogalacturonan I rhamnosyltransferase 1-like [ Mangifera indica (mango) ]

Gene ID: 123216266, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123216266
Gene description
rhamnogalacturonan I rhamnosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123216266 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 5 NC_058141.1 (12304513..12309185)

Chromosome 5 - NC_058141.1Genomic Context describing neighboring genes Neighboring gene integrin-linked protein kinase 1-like Neighboring gene transmembrane emp24 domain-containing protein p24delta9-like Neighboring gene uncharacterized LOC123216366 Neighboring gene uncharacterized LOC123216002

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058141.1 Chromosome 5 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058141.1 Reference CATAS_Mindica_2.1

    Range
    12304513..12309185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044636669.1 → XP_044492604.1  rhamnogalacturonan I rhamnosyltransferase 1-like

    Conserved Domains (1) summary
    cd11299
    Location:95 → 419
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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