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LOC123215673 cellulose synthase A catalytic subunit 3 [UDP-forming]-like [ Mangifera indica (mango) ]

Gene ID: 123215673, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123215673
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123215673 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 5 NC_058141.1 (13150408..13156971)

Chromosome 5 - NC_058141.1Genomic Context describing neighboring genes Neighboring gene carotenoid 9,10(9',10')-cleavage dioxygenase 1-like Neighboring gene uncharacterized LOC123215271 Neighboring gene nuclear transcription factor Y subunit A-1-like Neighboring gene zinc finger CCCH domain-containing protein 30-like Neighboring gene protein DETOXIFICATION 43-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058141.1 Chromosome 5 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cellulose synthase A catalytic subunit 3 [UDP-forming]-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058141.1 Reference CATAS_Mindica_2.1

    Range
    13150408..13156971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044635868.1 → XP_044491803.1  LOW QUALITY PROTEIN: cellulose synthase A catalytic subunit 3 [UDP-forming]-like

    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1079
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
Nucleotide Protein
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