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LOC123215552 probable galacturonosyltransferase 15 [ Mangifera indica (mango) ]

Gene ID: 123215552, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123215552
Gene description
probable galacturonosyltransferase 15
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123215552 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 5 NC_058141.1 (15106886..15113909, complement)

Chromosome 5 - NC_058141.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like Neighboring gene agamous-like MADS-box protein MADS1 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2-like Neighboring gene uncharacterized LOC123215670

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058141.1 Chromosome 5 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. Sherman A, et al. BMC Plant Biol, 2015 Nov 14. PMID 26573148, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058141.1 Reference CATAS_Mindica_2.1

    Range
    15106886..15113909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044635699.1 → XP_044491634.1  probable galacturonosyltransferase 15 isoform X1

    Conserved Domains (1) summary
    PLN02867
    Location:1 → 526
    PLN02867; Probable galacturonosyltransferase

  2. XM_044635702.1 → XP_044491637.1  probable galacturonosyltransferase 15 isoform X4

    Conserved Domains (1) summary
    PLN02867
    Location:1 → 407
    PLN02867; Probable galacturonosyltransferase

  3. XM_044635701.1 → XP_044491636.1  probable galacturonosyltransferase 15 isoform X3

    Conserved Domains (1) summary
    PLN02867
    Location:1 → 432
    PLN02867; Probable galacturonosyltransferase

  4. XM_044635700.1 → XP_044491635.1  probable galacturonosyltransferase 15 isoform X2

    Conserved Domains (1) summary
    PLN02867
    Location:1 → 433
    PLN02867; Probable galacturonosyltransferase
Nucleotide Protein
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