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LOC123212510 hydroxyproline O-galactosyltransferase GALT6-like [ Mangifera indica (mango) ]

Gene ID: 123212510, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123212510
Gene description
hydroxyproline O-galactosyltransferase GALT6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123212510 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 3 NC_058139.1 (2196732..2200865, complement)

Chromosome 3 - NC_058139.1Genomic Context describing neighboring genes Neighboring gene AAA-ATPase ASD, mitochondrial-like Neighboring gene transcription initiation factor IIB-like Neighboring gene transcription factor MYB35-like Neighboring gene uncharacterized LOC123211447

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058139.1 Chromosome 3 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058139.1 Reference CATAS_Mindica_2.1

    Range
    2196732..2200865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044631672.1 → XP_044487607.1  hydroxyproline O-galactosyltransferase GALT6-like

    Conserved Domains (1) summary
    PLN03133
    Location:51 → 673
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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