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LOC123208882 cellulose synthase-like protein D3 [ Mangifera indica (mango) ]

Gene ID: 123208882, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123208882
Gene description
cellulose synthase-like protein D3
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123208882 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 2 NC_058138.1 (7908838..7914020, complement)

Chromosome 2 - NC_058138.1Genomic Context describing neighboring genes Neighboring gene FAS1 domain-containing protein SELMODRAFT_448915 Neighboring gene uncharacterized LOC123209661 Neighboring gene UPF0481 protein At3g47200-like Neighboring gene uncharacterized LOC123209662

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058138.1 Chromosome 2 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058138.1 Reference CATAS_Mindica_2.1

    Range
    7908838..7914020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044626500.1 → XP_044482435.1  cellulose synthase-like protein D3

    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1142
    PLN02248; cellulose synthase-like protein

  2. XM_044626501.1 → XP_044482436.1  cellulose synthase-like protein D3

    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1142
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version

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