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LOC123206792 sucrose synthase 2 [ Mangifera indica (mango) ]

Gene ID: 123206792, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123206792
Gene description
sucrose synthase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123206792 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) Unplaced Scaffold NW_025401141.1 (39897..45820)

NW_025401141.1Genomic Context describing neighboring genes Neighboring gene multiple organellar RNA editing factor 3, mitochondrial-like Neighboring gene exopolygalacturonase-like Neighboring gene probable acyl-CoA dehydrogenase IBR3 Neighboring gene putative pectinesterase/pectinesterase inhibitor 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025401141 Unplaced Scaffold Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. Sherman A, et al. BMC Plant Biol, 2015 Nov 14. PMID 26573148, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NW_025401141.1 Reference CATAS_Mindica_2.1

    Range
    39897..45820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044624033.1 → XP_044479968.1  sucrose synthase 2 isoform X1

    Conserved Domains (1) summary
    PLN00142
    Location:7 → 804
    PLN00142; sucrose synthase

  2. XM_044624034.1 → XP_044479969.1  sucrose synthase 2 isoform X2

    Conserved Domains (1) summary
    PLN00142
    Location:1 → 751
    PLN00142; sucrose synthase

  3. XM_044624036.1 → XP_044479971.1  sucrose synthase 2 isoform X3

    Conserved Domains (1) summary
    PLN00142
    Location:37 → 612
    PLN00142; sucrose synthase

  4. XM_044624037.1 → XP_044479972.1  sucrose synthase 2 isoform X4

    Conserved Domains (1) summary
    PLN00142
    Location:35 → 610
    PLN00142; sucrose synthase
Nucleotide Protein
Heading Accession and Version

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