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LOC123204661 rhamnogalacturonan I rhamnosyltransferase 1-like [ Mangifera indica (mango) ]

Gene ID: 123204661, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123204661
Gene description
rhamnogalacturonan I rhamnosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123204661 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 20 NC_058156.1 (9647479..9651014)

Chromosome 20 - NC_058156.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123204118 Neighboring gene uncharacterized LOC123203906 Neighboring gene transcription factor BIM1-like Neighboring gene phosphatidylinositol 4-kinase gamma 7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058156.1 Chromosome 20 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058156.1 Reference CATAS_Mindica_2.1

    Range
    9647479..9651014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044621442.1 → XP_044477377.1  rhamnogalacturonan I rhamnosyltransferase 1-like

    Conserved Domains (1) summary
    cd11299
    Location:108 → 433
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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