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LOC123201375 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [ Mangifera indica (mango) ]

Gene ID: 123201375, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123201375
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123201375 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
18
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 18 NC_058154.1 (9057143..9078469, complement)

Chromosome 18 - NC_058154.1Genomic Context describing neighboring genes Neighboring gene protein SRG1-like Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like Neighboring gene NADH kinase Neighboring gene E3 ubiquitin-protein ligase CCNB1IP1 homolog Neighboring gene B-box zinc finger protein 22-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058154.1 Chromosome 18 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. Sherman A, et al. BMC Plant Biol, 2015 Nov 14. PMID 26573148, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058154.1 Reference CATAS_Mindica_2.1

    Range
    9057143..9078469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044616852.1 → XP_044472787.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like

    UniProtKB/TrEMBL
    A0A4D6IX44
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 928
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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