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LOC123200434 hydroxyproline O-arabinosyltransferase 1-like [ Mangifera indica (mango) ]

Gene ID: 123200434, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123200434
Gene description
hydroxyproline O-arabinosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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Genomic context

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See LOC123200434 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 17 NC_058153.1 (250315..253692, complement)

Chromosome 17 - NC_058153.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S11 Neighboring gene uncharacterized LOC123200432 Neighboring gene uncharacterized LOC123200831 Neighboring gene homeobox protein knotted-1-like 3 Neighboring gene uncharacterized LOC123200435

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058153.1 Chromosome 17 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mango (Mangifera indica L.) germplasm diversity based on single nucleotide polymorphisms derived from the transcriptome. Sherman A, et al. BMC Plant Biol, 2015 Nov 14. PMID 26573148, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058153.1 Reference CATAS_Mindica_2.1

    Range
    250315..253692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044615618.1 → XP_044471553.1  hydroxyproline O-arabinosyltransferase 1-like isoform X2

  2. XM_044615619.1 → XP_044471554.1  hydroxyproline O-arabinosyltransferase 1-like isoform X3

  3. XM_044615616.1 → XP_044471551.1  hydroxyproline O-arabinosyltransferase 1-like isoform X1

RNA

  1. XR_006498563.1 RNA Sequence

  2. XR_006498565.1 RNA Sequence

  3. XR_006498562.1 RNA Sequence

  4. XR_006498559.1 RNA Sequence

  5. XR_006498567.1 RNA Sequence

  6. XR_006498564.1 RNA Sequence

  7. XR_006498566.1 RNA Sequence

  8. XR_006498561.1 RNA Sequence

  9. XR_006498560.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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