U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC123192478 probable beta-1,4-xylosyltransferase IRX10 [ Mangifera indica (mango) ]

Gene ID: 123192478, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC123192478
Gene description
probable beta-1,4-xylosyltransferase IRX10
Gene type
protein coding
RefSeq status
MODEL
Organism
Mangifera indica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC123192478 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
100 current CATAS_Mindica_2.1 (GCF_011075055.1) 12 NC_058148.1 (7732727..7735093)

Chromosome 12 - NC_058148.1Genomic Context describing neighboring genes Neighboring gene glycine--tRNA ligase, mitochondrial 1-like Neighboring gene cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transaldolase-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_058148.1 Chromosome 12 Reference CATAS_Mindica_2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,4-xylosyltransferase IRX10

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CATAS_Mindica_2.1

Genomic

  1. NC_058148.1 Reference CATAS_Mindica_2.1

    Range
    7732727..7735093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044605051.1 → XP_044460986.1  probable beta-1,4-xylosyltransferase IRX10

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases