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LOC123169346 probable glucomannan 4-beta-mannosyltransferase 9 [ Triticum aestivum (bread wheat) ]

Gene ID: 123169346, updated on 30-Nov-2023

Summary

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Gene symbol
LOC123169346
Gene description
probable glucomannan 4-beta-mannosyltransferase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum aestivum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Genomic context

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See LOC123169346 in Genome Data Viewer
Location:
chromosome: 7D
Exon count:
9
Annotation release Status Assembly Chr Location
100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 7D NC_057814.1 (506067728..506071395, complement)

Chromosome 7D - NC_057814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123171207 Neighboring gene potassium transporter 10-like Neighboring gene pentatricopeptide repeat-containing protein At4g16470-like Neighboring gene uncharacterized LOC123166870 Neighboring gene uncharacterized LOC123166315

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057814.1 Chromosome 7D Reference IWGSC CS RefSeq v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data. Duan J, et al. BMC Genomics, 2012 Aug 14. PMID 22891638, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucomannan 4-beta-mannosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IWGSC CS RefSeq v2.1 Primary Assembly

Genomic

  1. NC_057814.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Range
    506067728..506071395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044587191.1 → XP_044443126.1  probable glucomannan 4-beta-mannosyltransferase 9

    UniProtKB/TrEMBL
    A0A3B6TUZ1
    Conserved Domains (1) summary
    cd06437
    Location:80 → 316
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
Nucleotide Protein
Heading Accession and Version

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