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TPI1 triosephosphate isomerase 1 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123033226, updated on 22-Mar-2024

Summary

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Gene symbol
TPI1
Gene description
triosephosphate isomerase 1
Locus tag
EYD10_15181
See related
Ensembl:ENSVKKG00000003613
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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See TPI1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025336223.1 (3530175..3539868, complement)

NW_025336223.1Genomic Context describing neighboring genes Neighboring gene enolase 2 Neighboring gene leucine rich repeat containing 23 Neighboring gene ubiquitin specific peptidase 5 Neighboring gene cell division cycle associated 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025336223 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triose-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
triosephosphate isomerase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025336223.1 Reference ASM479886v1

    Range
    3530175..3539868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044449726.1 → XP_044305661.1  triosephosphate isomerase

    UniProtKB/TrEMBL
    A0A8D2J612
    Related
    ENSVKKP00000004865.1, ENSVKKT00000005000.1
    Conserved Domains (1) summary
    PTZ00333
    Location:1 → 246
    PTZ00333; triosephosphate isomerase; Provisional
Nucleotide Protein
Heading Accession and Version

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