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HCFC1 host cell factor C1 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123029976, updated on 22-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Locus tag
EYD10_13222
See related
Ensembl:ENSVKKG00000018641
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335972.1 (2730853..2758269, complement)

NW_025335972.1Genomic Context describing neighboring genes Neighboring gene renin binding protein Neighboring gene ras-related protein Rab-7a-like Neighboring gene transmembrane protein 187 Neighboring gene interleukin 1 receptor associated kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335972 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1
Names
Host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335972.1 Reference ASM479886v1

    Range
    2730853..2758269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044443449.1 → XP_044299384.1  host cell factor 1 isoform X1

    Conserved Domains (4) summary
    PLN02193
    Location:4 → 331
    PLN02193; nitrile-specifier protein
    PRK14951
    Location:1598 → 1695
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    cd00063
    Location:2024 → 2053
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:209 → 262
    Kelch; KELCH repeat [structural motif]

  2. XM_044443451.1 → XP_044299386.1  host cell factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2LZ69
    Related
    ENSVKKP00000028941.1, ENSVKKT00000029628.1
    Conserved Domains (5) summary
    PLN02193
    Location:4 → 331
    PLN02193; nitrile-specifier protein
    cd00063
    Location:2016 → 2045
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:209 → 262
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:328 → 360
    Kelch_5; Kelch motif
    NF033913
    Location:1589 → 1683
    fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
Nucleotide Protein
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