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SDC4 syndecan 4 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123028462, updated on 22-Mar-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
Locus tag
EYD10_12553
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Also known as
SDC4_0; SDC4_1; Syndecan-4
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335889.1 (4770915..4795236, complement)

NW_025335889.1Genomic Context describing neighboring genes Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene uncharacterized LOC123028486 Neighboring gene SYS1 golgi trafficking protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335889 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335889.1 Reference ASM479886v1

    Range
    4770915..4795236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044440274.1 → XP_044296209.1  syndecan-4 isoform X1

    Conserved Domains (1) summary
    smart00294
    Location:171 → 188
    4.1m; putative band 4.1 homologues' binding motif

  2. XM_044440275.1 → XP_044296210.1  syndecan-4 isoform X2

    Conserved Domains (1) summary
    smart00294
    Location:140 → 157
    4.1m; putative band 4.1 homologues' binding motif
Nucleotide Protein
Heading Accession and Version

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