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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123025406, updated on 22-Mar-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Locus tag
EYD10_10927
See related
Ensembl:ENSVKKG00000013734
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Also known as
TMTC1_0; TMTC1_1
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335701.1 (12588866..12771102, complement)

NW_025335701.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 239-like Neighboring gene ovochymase 1 Neighboring gene importin 8 Neighboring gene caprin family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335701 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1
Names
Protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335701.1 Reference ASM479886v1

    Range
    12588866..12771102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044434084.1 → XP_044290019.1  protein O-mannosyl-transferase TMTC1 isoform X3

    UniProtKB/TrEMBL
    A0A8D2LEJ4
    Conserved Domains (2) summary
    TIGR02917
    Location:400 → 761
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:468 → 496
    TPR; TPR repeat [structural motif]

  2. XM_044434083.1 → XP_044290018.1  protein O-mannosyl-transferase TMTC1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2LEG2
    Conserved Domains (3) summary
    COG3063
    Location:427 → 546
    PilF; Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]
    TIGR02917
    Location:491 → 806
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:513 → 541
    TPR; TPR repeat [structural motif]

  3. XM_044434082.1 → XP_044290017.1  protein O-mannosyl-transferase TMTC1 isoform X1

    UniProtKB/TrEMBL
    A0A8D2LEG2
    Related
    ENSVKKP00000020394.1, ENSVKKT00000020899.1
    Conserved Domains (2) summary
    TIGR02917
    Location:422 → 828
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:436 → 464
    TPR; TPR repeat [structural motif]

  4. XM_044434085.1 → XP_044290020.1  protein O-mannosyl-transferase TMTC1 isoform X4

    Conserved Domains (2) summary
    COG0457
    Location:456 → 641
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:462 → 490
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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