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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123022667, updated on 22-Mar-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Locus tag
EYD10_02103
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335568.1 (40132688..40196644)

NW_025335568.1Genomic Context describing neighboring genes Neighboring gene sodium leak channel, non-selective Neighboring gene maestro heat-like repeat-containing protein family member 6 Neighboring gene uncharacterized LOC123023147 Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene propionyl-CoA carboxylase subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335568 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC4
Names
Protein O-mannosyl-transferase TMTC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335568.1 Reference ASM479886v1

    Range
    40132688..40196644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044428543.1 → XP_044284478.1  protein O-mannosyl-transferase TMTC4 isoform X1

    Conserved Domains (2) summary
    COG0457
    Location:479 → 697
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]

  2. XM_044428544.1 → XP_044284479.1  protein O-mannosyl-transferase TMTC4 isoform X2

    Conserved Domains (2) summary
    COG0457
    Location:448 → 666
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:449 → 477
    TPR; TPR repeat [structural motif]

RNA

  1. XR_006414547.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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