U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ANKFN1 ankyrin repeat and fibronectin type III domain containing 1 [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123019316, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ANKFN1
Gene description
ankyrin repeat and fibronectin type III domain containing 1
Locus tag
EYD10_07190
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Also known as
ANKFN1_0
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ANKFN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335349.1 (29606809..29908931)

NW_025335349.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 100 Neighboring gene phosphatidylcholine transfer protein Neighboring gene noggin Neighboring gene chromosome unknown C17orf67 homolog

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_025335349 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of mitotic spindle orientation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment of bipolar cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ankyrin repeat and fibronectin type-III domain-containing protein 1
Names
Ankyrin repeat and fibronectin type-III domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335349.1 Reference ASM479886v1

    Range
    29606809..29908931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044422145.1 → XP_044278080.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

    Conserved Domains (3) summary
    cd00063
    Location:200 → 287
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00045
    Location:69 → 100
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:68 → 123
    Ank_4; Ankyrin repeats (many copies)

  2. XM_044422144.1 → XP_044278079.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X1

    Conserved Domains (3) summary
    cd00063
    Location:200 → 287
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00045
    Location:69 → 100
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:68 → 123
    Ank_4; Ankyrin repeats (many copies)

  3. XM_044422147.1 → XP_044278082.1  ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X2

    Conserved Domains (3) summary
    cd00063
    Location:200 → 287
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00045
    Location:69 → 100
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:68 → 123
    Ank_4; Ankyrin repeats (many copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.